Gene Naga_100041g46
September 05, 2018
Summary
| Coordinates: | NG_scf08 (267933-270045) |
| Function: | violaxanthin de-epoxidase |
| Calycin; Calycin-like; Violaxanthin de-epoxidase; |
Enzyme Code
- EC:1.10.99.3 - Violaxanthin de-epoxidase
Gene expression (RPKM)
| +N (day 3) | 32.270 |
| -N (day 3) | 30.436 |
| +N (day +6) | 20.645 |
| -N (day 6) | 45.495 |
BLAST
| Accession | Description | Bit Score |
| gi|224006239|ref|XP_002292080.1 | diadinoxanthin de-epoxidase [Thalassiosira pseudonana CCMP1335] | 355.910 |
| gi|298711264|emb|CBJ26509.1 | violaxanthin de-epoxidase, chloroplast precursor [Ectocarpus siliculosus] | 354.755 |
| gi|87299443|dbj|BAE79554.1 | violaxanthin deepoxidase [Chrysanthemum x morifolium] | 333.183 |
| gi|219115695|ref|XP_002178643.1 | violaxanthin deepoxidase [Phaeodactylum tricornutum CCAP 1055/1] | 332.028 |
| gi|242072690|ref|XP_002446281.1 | hypothetical protein SORBIDRAFT_06g012950 [Sorghum bicolor] | 330.487 |
| gi|223587500|gb|ACM92036.1 | violaxanthin de-epoxidase [Solanum lycopersicum] | 330.487 |
| gi|296085191|emb|CBI28686.3 | unnamed protein product [Vitis vinifera] | 328.946 |
| gi|225462409|ref|XP_002267152.1 | PREDICTED: violaxanthin de-epoxidase, chloroplastic [Vitis vinifera] | 328.946 |
| gi|226508670|ref|NP_001147756.1 | violaxanthin de-epoxidase [Zea mays] | 328.561 |
| gi|115457984|ref|NP_001052592.1 | Os04g0379700 [Oryza sativa Japonica Group] | 327.020 |
| gi|17438153|gb|AAF97601.3 | violaxanthin de-epoxidase precursor [Oryza sativa Indica Group] | 327.020 |
| gi|15825383|gb|AAL09678.1 | AF411133_1violaxanthin de-epoxidase precursor [Oryza sativa Japonica Group] | 326.635 |
| gi|32489060|emb|CAE03990.1 | OSJNBb0089B03.4 [Oryza sativa Japonica Group] | 325.479 |
| gi|13676584|gb|AAK38177.1 | AF265294_1violaxanthin de-epoxidase [Triticum aestivum] | 325.094 |
| gi|357163005|ref|XP_003579594.1 | PREDICTED: violaxanthin de-epoxidase, chloroplastic-like [Brachypodium distachyon] | 324.709 |
| gi|296875326|gb|ADH82116.1 | violaxanthin de-epoxidase [Citrus sinensis] | 324.324 |
| gi|323451643|gb|EGB07519.1 | hypothetical protein AURANDRAFT_2523, partial [Aureococcus anophagefferens] | 323.168 |
| gi|350538671|ref|NP_001234610.1 | violaxanthin de-epoxidase precursor [Solanum lycopersicum] | 323.168 |
| gi|81296554|gb|ABB70514.1 | violaxanthin de-epoxidase [Coffea canephora] | 322.013 |
| gi|75220947|sp|Q40251.1 | VDE_LACSARecName: Full=Violaxanthin de-epoxidase, chloroplastic; Flags: Precursor | 321.627 |
Protein informations
| COIL | coil | |
| GENE3D | G3DSA:2.40.128.20 | |
| GO | GO:0009507 | chloroplast |
| GO | GO:0046422 | violaxanthin de-epoxidase activity |
| GO | GO:0055114 | oxidation-reduction process |
| GO | GO:0005488 | binding |
| INTERPRO | IPR010788 | Violaxanthin de-epoxidase |
| INTERPRO | IPR011038 | Calycin-like |
| INTERPRO | IPR012674 | Calycin |
| PFAM | PF07137 | |
| SEG | seg | |
| SUPERFAMILY | SSF50814 |