Gene Naga_100016g50
February 15, 2019
Summary
| Coordinates: | NG_chr12 (283615-286296) |
| Function: | violaxanthin de-epoxidase |
| Calycin; Calycin-like; Violaxanthin de-epoxidase; |
Enzyme Code
- EC:1.10.99.3 - Violaxanthin de-epoxidase
Gene expression (RPKM)
| +N (day 3) | 46.767 |
| -N (day 3) | 40.600 |
| +N (day +6) | 24.207 |
| -N (day 6) | 30.232 |
BLAST
| Accession | Description | Bit Score |
| gi|387219137|gb|AFJ69277.1 | violaxanthin de-epoxidase [Nannochloropsis gaditana CCMP526] | 1176.390 |
| gi|223998935|ref|XP_002289140.1 | violaxanthin de-epoxidase-like 1 [Thalassiosira pseudonana CCMP1335] | 231.876 |
| gi|298709252|emb|CBJ31191.1 | violaxanthin de-epoxidase-like protein of unknown function [Ectocarpus siliculosus] | 225.328 |
| gi|323450242|gb|EGB06124.1 | hypothetical protein AURANDRAFT_65820 [Aureococcus anophagefferens] | 222.246 |
| gi|219119764|ref|XP_002180635.1 | precursor of protein violaxanthin deepoxidase-like protein [Phaeodactylum tricornutum CCAP 1055/1] | 216.853 |
| gi|323452106|gb|EGB07981.1 | hypothetical protein AURANDRAFT_64560 [Aureococcus anophagefferens] | 215.312 |
| gi|224012337|ref|XP_002294821.1 | predicted protein [Thalassiosira pseudonana CCMP1335] | 209.149 |
| gi|219118562|ref|XP_002180051.1 | precursor of protein violaxanthin deepoxidase-like protein [Phaeodactylum tricornutum CCAP 1055/1] | 205.682 |
| gi|193890981|gb|ACF28644.1 | violaxanthin de-epoxidase [Amphidinium carteriae] | 175.637 |
| gi|357512435|ref|XP_003626506.1 | Violaxanthin de-epoxidase [Medicago truncatula] | 127.487 |
| gi|81296554|gb|ABB70514.1 | violaxanthin de-epoxidase [Coffea canephora] | 125.946 |
| gi|81302478|gb|ABB70816.1 | violaxanthin de-epoxidase [Coffea arabica] | 125.946 |
| gi|307106946|gb|EFN55190.1 | hypothetical protein CHLNCDRAFT_35609 [Chlorella variabilis] | 124.790 |
| gi|296875326|gb|ADH82116.1 | violaxanthin de-epoxidase [Citrus sinensis] | 124.405 |
| gi|15223260|ref|NP_172331.1 | Violaxanthin de-epoxidase [Arabidopsis thaliana] | 123.635 |
| gi|296085191|emb|CBI28686.3 | unnamed protein product [Vitis vinifera] | 123.635 |
| gi|225462409|ref|XP_002267152.1 | PREDICTED: violaxanthin de-epoxidase, chloroplastic [Vitis vinifera] | 123.250 |
| gi|75266081|sp|Q9SM43.2 | VDE_SPIOLRecName: Full=Violaxanthin de-epoxidase, chloroplastic; Flags: Precursor | 123.250 |
| gi|297843642|ref|XP_002889702.1 | non-photochemical quenching 1 [Arabidopsis lyrata subsp. lyrata] | 123.250 |
| gi|211939916|gb|ACJ13438.1 | violaxanthin de-epoxidase [Amphidinium carteriae] | 121.709 |
Protein informations
| GENE3D | G3DSA:2.40.128.20 | |
| GO | GO:0009507 | chloroplast |
| GO | GO:0046422 | violaxanthin de-epoxidase activity |
| GO | GO:0055114 | oxidation-reduction process |
| GO | GO:0005488 | binding |
| INTERPRO | IPR010788 | Violaxanthin de-epoxidase |
| INTERPRO | IPR011038 | Calycin-like |
| INTERPRO | IPR012674 | Calycin |
| PFAM | PF07137 | |
| SEG | seg | |
| SUPERFAMILY | SSF50814 |