Gene Naga_100008g13
April 06, 2018
Summary
| Coordinates: | NG_chr05 (878266-880071) |
| Function: | mechanosensitive ion channel |
| Mechanosensitive ion channel MscS, transmembrane-2; Like-Sm ribonucleoprotein (LSM)-related domain; Mechanosensitive ion channel MscS; |
Gene expression (RPKM)
| +N (day 3) | 33.011 |
| -N (day 3) | 32.391 |
| +N (day +6) | 45.778 |
| -N (day 6) | 59.887 |
BLAST
| Accession | Description | Bit Score |
| gi|359462512|ref|ZP_09251075.1 | mechanosensitive ion channel [Acaryochloris sp. CCMEE 5410] | 95.515 |
| gi|326432720|gb|EGD78290.1 | hypothetical protein PTSG_12875 [Salpingoeca sp. ATCC 50818] | 88.582 |
| gi|322491171|emb|CBZ26436.1 | conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] | 86.656 |
| gi|146105002|ref|XP_001469960.1 | conserved hypothetical protein [Leishmania infantum JPCM5] | 85.500 |
| gi|322820847|gb|EFZ27347.1 | hypothetical protein TCSYLVIO_6448 [Trypanosoma cruzi] | 84.730 |
| gi|163783732|ref|ZP_02178718.1 | hypothetical protein HG1285_01508 [Hydrogenivirga sp. 128-5-R1-1] | 84.730 |
| gi|269838137|ref|YP_003320365.1 | mechanosensitive ion channel MscS [Sphaerobacter thermophilus DSM 20745] | 82.804 |
| gi|322505851|emb|CAM44358.2 | conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] | 81.648 |
| gi|154346562|ref|XP_001569218.1 | hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] | 81.648 |
| gi|71413615|ref|XP_808940.1 | hypothetical protein [Trypanosoma cruzi strain CL Brener] | 80.878 |
| gi|71408473|ref|XP_806638.1 | hypothetical protein [Trypanosoma cruzi strain CL Brener] | 80.493 |
| gi|295134449|ref|YP_003585125.1 | small-conductance mechanosensitive ion channel protein [Zunongwangia profunda SM-A87] | 79.337 |
| gi|325972793|ref|YP_004248984.1 | unnamed protein product [Sphaerochaeta globus str. Buddy] | 78.952 |
| gi|157877719|ref|XP_001687164.1 | hypothetical protein [Leishmania major strain Friedlin] | 78.181 |
| gi|212213081|ref|YP_002304017.1 | mechanosensitive ion channel [Coxiella burnetii CbuG_Q212] | 77.411 |
| gi|29653778|ref|NP_819470.1 | transporter, small conductance mechanosensitive ion channel (MscS) family [Coxiella burnetii RSA 493] | 77.411 |
| gi|159900895|ref|YP_001547142.1 | unnamed protein product [Herpetosiphon aurantiacus DSM 785] | 77.026 |
| gi|332290385|ref|YP_004421237.1 | mechanosensitive channel MscS [Gallibacterium anatis UMN179] | 75.870 |
| gi|153209660|ref|ZP_01947473.1 | transporter, small conductance mechanosensitive ion channel (MscS) family [Coxiella burnetii 'MSU Goat Q177'] | 75.870 |
| gi|159905571|ref|YP_001549233.1 | mechanosensitive ion channel MscS [Methanococcus maripaludis C6] | 73.944 |
Protein informations
| GO | GO:0016020 | membrane |
| GO | GO:0055085 | transmembrane transport |
| GO | GO:0016020 | membrane |
| INTERPRO | IPR006685 | Mechanosensitive ion channel MscS |
| INTERPRO | IPR010920 | Like-Sm ribonucleoprotein (LSM)-related domain |
| INTERPRO | IPR011014 | Mechanosensitive ion channel MscS, transmembrane-2 |
| PFAM | PF00924 | |
| SEG | seg | |
| SUPERFAMILY | SSF50182 | |
| SUPERFAMILY | SSF82861 |